Quantitative mass spectrometry-based proteomics: an overview

S Rozanova, K Barkovits, M Nikolov, C Schmidt… - Quantitative methods in …, 2021 - Springer
In recent decades, mass spectrometry has moved more than ever before into the front line of
protein-centered research. After being established at the qualitative level, the more …

[PDF][PDF] Preterm birth: causes, consequences, and prevention

RE Behrman, AS Butler - 2007 - cds.psych.ucla.edu
Although individual behaviors have not been proven to have a strong influence on the risk of
preterm birth, consistent evidence suggests that a constellation of favorable lifestyle factors …

Proteomics by mass spectrometry: approaches, advances, and applications

JR Yates, CI Ruse… - Annual review of …, 2009 - annualreviews.org
Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale
proteomics. In this review, we dissect the overall framework of the MS experiment into its key …

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

AR Erickson, BL Cantarel, R Lamendella, Y Darzi… - PloS one, 2012 - journals.plos.org
Crohn's disease (CD) is an inflammatory bowel disease of complex etiology, although
dysbiosis of the gut microbiota has been implicated in chronic immune-mediated …

Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)

DC Dieterich, AJ Link, J Graumann, DA Tirrell… - Proceedings of the …, 2006 - pnas.org
In both normal and pathological states, cells respond rapidly to environmental cues by
synthesizing new proteins. The selective identification of a newly synthesized proteome has …

[HTML][HTML] Reproducibility, specificity and accuracy of relative quantification using spectral library-based data-independent acquisition

K Barkovits, S Pacharra, K Pfeiffer, S Steinbach… - Molecular & Cellular …, 2020 - Elsevier
Currently data-dependent acquisition (DDA) is the method of choice for mass spectrometry-
based proteomics discovery experiments, but data-independent acquisition (DIA) is steadily …

Small changes huge impact: the role of protein posttranslational modifications in cellular homeostasis and disease

TM Karve, AK Cheema - Journal of amino acids, 2011 - Wiley Online Library
Posttranslational modifications (PTMs) modulate protein function in most eukaryotes and
have a ubiquitous role in diverse range of cellular functions. Identification, characterization …

Clinical biomarkers in drug discovery and development

R Frank, R Hargreaves - Nature reviews Drug discovery, 2003 - nature.com
Biomarkers enable the characterization of patient populations and quantitation of the extent
to which new drugs reach intended targets, alter proposed pathophysiological mechanisms …

[HTML][HTML] Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5

RAM De Bruin, WH McDonald, TI Kalashnikova… - Cell, 2004 - cell.com
G1-specific transcriptional activation by Cln3/CDK initiates the budding yeast cell cycle. To
identify targets of Cln3/CDK, we analyzed the SBF and MBF transcription factor complexes …

The myeloperoxidase product hypochlorous acid oxidizes HDL in the human artery wall and impairs ABCA1-dependent cholesterol transport

C Bergt, S Pennathur, X Fu, J Byun, K O'Brien… - Proceedings of the …, 2004 - pnas.org
Although oxidatively damaged lipoproteins are implicated in vascular injury, there is little
information regarding the role of high-density lipoprotein (HDL) oxidation in atherogenesis …